计算机与现代化 ›› 2020, Vol. 0 ›› Issue (10): 44-50.

• 图像处理 • 上一篇    下一篇

基于3D全卷积深度神经网络的脑白质病变分割方法

  

  1. (1.大连大学信息工程学院,辽宁大连116622;2.大连理工大学生物医学工程学院,辽宁大连116024)
  • 出版日期:2020-10-14 发布日期:2020-10-14
  • 作者简介:赵欣(1974—),女,辽宁大连人,副教授,博士,研究方向:人工智能,数字医学图像处理,E-mail: zx38610@yeah.net; 石德来(1996—),男(回族),黑龙江鹤岗人,硕士研究生,研究方向:人工智能,数字医学图像处理,E-mail: 1604138705@qq.com; 王洪凯(1980—),男,辽宁大连人,副教授,博士,研究方向:人工智能,数字医学图像处理,E-mail: wang.hongkai@dlut.edu.cn。
  • 基金资助:
    国家自然科学基金资助项目(61971424); 辽宁省自然科学基金指导计划项目(2019-ZD-0305); 大连市科技创新基金资助项目(2018J12GX042, 2019J13SN100)

Segmentation of White Matter Lesions Based on 3D Full Convolutional Deep Neural Network

  1. (1. School of Information Engineering, Dalian University, Dalian 116622, China;
    2. School of Biomedical Engineering, Dalian University of Technology, Dalian 116024, China)
  • Online:2020-10-14 Published:2020-10-14

摘要: 脑白质病变影像的自动分割对于大脑疾病的临床诊断和研究具有重要的辅助作用。目前,研究者们主要采用深度学习解决脑白质病变部位的自动分割问题,虽取得一定成果,但仍存在分割精度不高、小病变无法被精确分割的问题。本文提出一种融合残差、金字塔池化和注意力机制的3D全卷积深度神经网络模型。该模型采用残差连接避免深层网络的梯度消失;采用金字塔池化聚合更多的上下文信息;采用注意力机制定位感兴趣的目标。各模块顺次衔接,构建具有较强学习能力的卷积模块链,并在链条两端分别附加上、下采样结构,形成完整的端到端模型。实验在MICCAI 2017数据集上进行,结果表明,本文方法的分割结果DSC得分为0.762,召回率为0.727,精确率为0.801,特异性为0.991,优于对比的其他方法。

关键词: 分割, 脑白质高信号, 金字塔池化, 注意力机制

Abstract: The automatic segmentation of brain white matter lesions has an important auxiliary role in the clinical diagnosis and research of brain diseases. At present, researchers mainly use deep learning method to solve the problem of automatic segmentation of white matter lesions. Although some achievements have been achieved, there are still problems of low segmentation accuracy and small lesions can’t be segmented precisely. In this paper, a fully convoluted 3D deep neural network model is proposed, which integrates residual, pyramid pooling and attention mechanism. In this model, the residual net is used to avoid the gradient disappearance; pyramid pooling is used to aggregate more context information; attention mechanism is used to locate the reign of interest. All modules are connected in order to build a convolutional module chain with strong learning ability, and the up and down sampling are attached at both ends of the chain to form a complete end-to-end deep neural network model. The experiment is carried out on the MICCAI 2017 data set. Experimental results show that compared with other methods, the DSC score of this paper is 0.762, the recall rate is 0.727, the accuracy rate is 0.801, the specificity is 0.991, and the segmentation results are better than those mentioned in other literatures.


Key words: segmentation, white matter hyperintensities, pyramidal pooling, attention mechanism